Intro

research in image segmentation and data mining.


2019 update

posted on March 17, 2019
  • switched over to primarily using sql instead of nosql for database queries.
  • added pcie based nvme drives to all garglab servers
  • joined american college of radiology informatics advisory council
  • attending nvdia gtc in san jose

data mining the ehr

posted on March 17, 2019
  • cohort identification
  • search radiology, pathology, clinical reports and labs
  • search dicom headers, dicom annotations
  • data clinic 2-8177

AI Assisted annotation of dicom images

posted on March 17, 2019
  • train resnet for dicom image classification
  • train faster-rcnn for localizing regions of interest in dicom images
  • use interactive segmentation tools to segment roi pixels.
  • train unet / vnet on dicom images

prostate segmentation

posted on April 13, 2013
  • NCI-ISBI prostate segmentation challenge results.

dictionary compression

posted on April 13, 2013
  • radiology reports use a common set of phrases.

James Ryan Mason

posted on March 16, 2019